Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_32430 | P29942 | Positive | 3239209 - 3239967 | 25953.8 |
| hth-type transcriptional regulator | shim_32440 | O53478 | Positive | 3240103 - 3240354 | 9123.87 |
| hypothetical protein | shim_32450 | Not Available | Positive | 3240351 - 3240779 | 15843.3 |
| hypothetical protein | shim_32460 | Not Available | Positive | 3240817 - 3241131 | 10558.5 |
| l-asparaginase ii | shim_32470 | Not Available | Negative | 3241211 - 3242206 | 35051.8 |
| hypothetical protein | shim_32480 | Not Available | Positive | 3242376 - 3242912 | 18636.8 |
| hypothetical protein | shim_32490 | Not Available | Positive | 3243034 - 3244038 | 36294.0 |
| hth domain protein | shim_32500 | Not Available | Negative | 3244027 - 3244722 | 26399.0 |
| hypothetical protein | shim_32510 | Not Available | Negative | 3244724 - 3245029 | 11133.2 |
| dual-specificity rna methyltransferase rlmn | shim_32520 | Q1GC70 | Positive | 3245182 - 3246381 | 44704.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
