Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_32330 | Not Available | Positive | 3229205 - 3229330 | 4949.04 |
| hypothetical protein | shim_32340 | Not Available | Positive | 3229297 - 3231576 | 83053.1 |
| hypothetical protein | shim_32350 | Not Available | Positive | 3231899 - 3232105 | 7787.11 |
| hypothetical protein | shim_32360 | Not Available | Negative | 3232388 - 3232813 | 15742.4 |
| Trna-thr | Not Available | Not Available | Positive | 3233308 - 3233383 | Not Available |
| diadenosine tetraphosphatase | shim_32380 | Not Available | Negative | 3233458 - 3234192 | 27684.8 |
| d-3-phosphoglycerate dehydrogenase | shim_32390 | P73821 | Negative | 3234282 - 3235877 | 56385.2 |
| phosphoserine aminotransferase | shim_32400 | P52878 | Negative | 3236002 - 3237150 | 40871.6 |
| stf0 sulfotransferase | shim_32410 | Not Available | Positive | 3237376 - 3238245 | 32686.5 |
| phosphoserine phosphatase | shim_32420 | Q9S281 | Positive | 3238327 - 3239205 | 30884.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
