Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-dehydroquinate dehydratase | shim_32230 | B9KTM3 | Positive | 3218366 - 3218803 | 15834.0 |
| hypothetical protein | shim_32240 | P71353 | Negative | 3218816 - 3221167 | 83023.6 |
| sulfate/thiosulfate import atp-binding protein cysa | shim_32250 | Q98KI3 | Negative | 3221393 - 3222475 | 38509.8 |
| molybdenum transport system permease protein modb | shim_32260 | P0AF02 | Negative | 3222472 - 3223167 | 24547.9 |
| molybdate-binding periplasmic protein precursor | shim_32270 | Q8PHA1 | Negative | 3223164 - 3223970 | 28529.2 |
| hypothetical protein | shim_32280 | Not Available | Negative | 3224102 - 3225598 | 53290.6 |
| hypothetical protein | shim_32290 | Not Available | Negative | 3225598 - 3225855 | 9883.54 |
| hypothetical protein | shim_32300 | Not Available | Negative | 3226372 - 3227376 | 35366.8 |
| hypothetical protein | shim_32310 | Not Available | Positive | 3227568 - 3228089 | 19775.6 |
| atp-dependent zinc metalloprotease ftsh | shim_32320 | B3DV46 | Positive | 3228123 - 3229205 | 39250.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
