Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chloramphenicol acetyltransferase | shim_32140 | Not Available | Negative | 3208602 - 3209219 | 22787.0 |
| phosphate-import permease protein phne | shim_32150 | A0A140NFA3 | Negative | 3209326 - 3210651 | 49000.1 |
| phosphate-import permease protein phne | shim_32160 | O69053 | Negative | 3210648 - 3211532 | 32088.9 |
| phosphate-import protein phnd precursor | shim_32170 | P16682 | Negative | 3211604 - 3212506 | 31861.2 |
| phosphate-import atp-binding protein phnc | shim_32180 | Q5LVC2 | Negative | 3212564 - 3213373 | 29446.3 |
| hypothetical protein | shim_32190 | Not Available | Negative | 3213417 - 3213509 | 3559.42 |
| Trna-met | Not Available | Not Available | Positive | 3213652 - 3213728 | Not Available |
| hypothetical protein | shim_32200 | O96876 | Negative | 3213793 - 3214278 | 16996.3 |
| 2-oxoacid ferredoxin oxidoreductase | shim_32210 | O07836 | Negative | 3214327 - 3217734 | 123872.0 |
| leucine-responsive regulatory protein | shim_32220 | P50337 | Positive | 3217862 - 3218302 | 16316.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
