Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose 1,5-bisphosphate phosphokinase phnn | shim_32040 | Q1GL02 | Negative | 3200961 - 3201506 | 18942.6 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phnl | shim_32050 | P16679 | Negative | 3201503 - 3202195 | 24439.4 |
| putative phosphonates utilization atp-binding protein phnk | shim_32060 | P16678 | Negative | 3202272 - 3203042 | 28372.3 |
| alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase | shim_32070 | Q52987 | Negative | 3203039 - 3203908 | 32214.1 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phni | shim_32080 | Q52986 | Negative | 3203905 - 3204999 | 40481.8 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phnh | shim_32090 | P16686 | Negative | 3204999 - 3205568 | 19712.7 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phng | shim_32100 | Q52984 | Negative | 3205568 - 3206011 | 15851.1 |
| putative transcriptional regulator phnf | shim_32110 | P44487 | Positive | 3206125 - 3206838 | 25851.7 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | shim_32120 | Not Available | Positive | 3206917 - 3208098 | 42827.2 |
| hypothetical protein | shim_32130 | Not Available | Negative | 3208186 - 3208434 | 8967.52 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
