Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glmz(srna)-inactivating ntpase | shim_31940 | A1B5Z0 | Negative | 3190290 - 3191222 | 33915.2 |
| hpr kinase/phosphorylase | shim_31950 | Not Available | Negative | 3191219 - 3191689 | 16189.4 |
| alkaline phosphatase synthesis sensor protein phor | shim_31960 | P72292 | Negative | 3191693 - 3193387 | 60637.3 |
| transcriptional regulatory protein creb | shim_31970 | P50350 | Negative | 3193412 - 3194113 | 26796.2 |
| phosphoenolpyruvate carboxykinase (atp) | shim_31980 | Q5LVJ2 | Positive | 3194488 - 3196086 | 58338.7 |
| putative chromate transport protein | shim_31990 | Q55027 | Negative | 3196175 - 3197467 | 46323.9 |
| chromate resistance exported protein | shim_32000 | P17552 | Negative | 3197471 - 3198289 | 30011.9 |
| hypothetical protein | shim_32010 | Not Available | Positive | 3198619 - 3199101 | 17105.4 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | shim_32020 | P16689 | Negative | 3199098 - 3200258 | 41672.6 |
| hypothetical protein | shim_32030 | Not Available | Positive | 3200296 - 3200979 | 24734.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
