Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_02870 | Not Available | Positive | 276370 - 277056 | 25250.6 |
| protein translocase subunit sece | shim_02880 | Not Available | Positive | 277149 - 277346 | 7167.1 |
| hypothetical protein | shim_02890 | Q8DD25 | Positive | 277540 - 278073 | 20193.0 |
| flavin-dependent tryptophan halogenase prna | shim_02900 | P95480 | Negative | 278147 - 279679 | 57142.6 |
| hypothetical protein | shim_02910 | Not Available | Negative | 279753 - 280043 | 10383.6 |
| 50s ribosomal protein l11 | shim_02920 | Q1GK54 | Positive | 280198 - 280623 | 14942.3 |
| 50s ribosomal protein l1 | shim_02930 | Q1GK53 | Positive | 280623 - 281321 | 23887.1 |
| autoinducer 2 sensor kinase/phosphatase luxq | shim_02940 | Q7MD16 | Positive | 281506 - 283359 | 67079.2 |
| putrescine-binding periplasmic protein precursor | shim_02950 | Not Available | Positive | 283350 - 284429 | 39357.2 |
| hypothetical protein | shim_02960 | Not Available | Negative | 284361 - 284678 | 11558.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
