Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional repressor yvoa | shim_31640 | P0ACM7 | Positive | 3163692 - 3164447 | 27699.1 |
| glutamine--fructose-6-phosphate aminotransferase (isomerizing) | shim_31650 | Q8ZTZ0 | Positive | 3164485 - 3165516 | 36227.2 |
| n-acetylglucosamine-6-phosphate deacetylase | shim_31660 | O32445 | Positive | 3165513 - 3166655 | 40186.4 |
| hypothetical protein | shim_31670 | Not Available | Positive | 3166705 - 3167184 | 17989.4 |
| hypothetical protein | shim_31680 | Not Available | Negative | 3167247 - 3167387 | 4975.2 |
| hypothetical protein | shim_31690 | Not Available | Positive | 3167461 - 3168180 | 28103.2 |
| l-aspartate dehydrogenase | shim_31700 | Not Available | Negative | 3168164 - 3169342 | 42652.4 |
| hypothetical protein | shim_31710 | Not Available | Positive | 3170464 - 3171033 | 20247.4 |
| methyl-accepting chemotaxis protein iii | shim_31720 | P55652 | Positive | 3171055 - 3172896 | 65583.4 |
| proteasome subunit beta | shim_31730 | Not Available | Negative | 3173057 - 3173806 | 27373.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
