Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_31440 | Q6M060 | Negative | 3142238 - 3142744 | 18181.4 |
| (s)-sulfolactate dehydrogenase | shim_31450 | Q1QWN6 | Negative | 3142765 - 3143682 | 31919.4 |
| glutarate-semialdehyde dehydrogenase davd | shim_31460 | Q9I6M5 | Negative | 3143682 - 3145130 | 50468.1 |
| aldose 1-epimerase | shim_31470 | Q96C23 | Negative | 3145127 - 3146143 | 37035.8 |
| inositol 2-dehydrogenase | shim_31480 | A4FDY3 | Negative | 3146140 - 3147225 | 40006.7 |
| hypothetical protein | shim_31490 | Not Available | Negative | 3147227 - 3148609 | 48457.1 |
| tagatose 1,6-diphosphate aldolase | shim_31500 | C1L056 | Negative | 3148620 - 3149648 | 37443.3 |
| putative sugar kinase ydjh | shim_31510 | P32143 | Negative | 3149648 - 3150532 | 30421.1 |
| cytochrome c551 peroxidase precursor | shim_31520 | Q50426 | Negative | 3150529 - 3152277 | 63310.1 |
| sialic acid-binding periplasmic protein siap precursor | shim_31530 | P55572 | Negative | 3152391 - 3153449 | 37801.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
