Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_31340 | Q0KBC8 | Negative | 3130372 - 3131637 | 43522.1 |
| 3-isopropylmalate dehydrogenase | shim_31350 | Q2RGA0 | Negative | 3131639 - 3132739 | 39166.8 |
| putative hth-type transcriptional regulator ydfh | shim_31360 | Not Available | Negative | 3132767 - 3133432 | 25101.3 |
| n-acyl homoserine lactonase | shim_31370 | Not Available | Positive | 3133619 - 3134416 | 29711.1 |
| glutathione import atp-binding protein gsia | shim_31380 | Not Available | Negative | 3134460 - 3136172 | 62927.0 |
| glutathione transport system permease protein gsid | shim_31390 | P51000 | Negative | 3136172 - 3137116 | 33967.1 |
| glutathione transport system permease protein gsic | shim_31400 | P94311 | Negative | 3137116 - 3138096 | 36017.2 |
| glutathione-binding protein gsib precursor | shim_31410 | Q5PGP4 | Negative | 3138203 - 3139768 | 56987.4 |
| heme-binding protein a precursor | shim_31420 | Not Available | Negative | 3139927 - 3141507 | 57885.6 |
| hypothetical protein | shim_31430 | P58416 | Negative | 3141687 - 3142241 | 19300.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
