Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna3(ser)-specific nuclease wapa precursor | shim_31240 | Not Available | Positive | 3113500 - 3119805 | 221117.0 |
| 4-methylaminobutanoate oxidase (formaldehyde-forming) | shim_31250 | Not Available | Negative | 3119891 - 3122485 | 95295.4 |
| trimethylamine methyltransferase (mttb) | shim_31260 | Q24SP7 | Negative | 3122472 - 3123983 | 55268.2 |
| glycine cleavage system transcriptional activator | shim_31270 | Not Available | Positive | 3124077 - 3125003 | 34921.7 |
| sialic acid trap transporter permease protein siat | shim_31280 | Not Available | Negative | 3125029 - 3126492 | 52571.9 |
| tripartite atp-independent periplasmic transporter, dctq component | shim_31290 | Not Available | Negative | 3126495 - 3127058 | 20657.5 |
| alpha-keto acid-binding periplasmic protein takp precursor | shim_31300 | Q3J1R2 | Negative | 3127167 - 3128192 | 37415.3 |
| autoinducer-2 (ai-2) modifying protein lsrg | shim_31310 | Not Available | Negative | 3128401 - 3128694 | 10941.1 |
| inositol 2-dehydrogenase | shim_31320 | B9JK80 | Negative | 3128705 - 3129733 | 37551.6 |
| l-fuculose phosphate aldolase | shim_31330 | A0A0H2VA12 | Negative | 3129737 - 3130375 | 23091.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
