Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-keto-3-deoxy-galactonokinase | shim_31140 | Q92RN7 | Negative | 3101891 - 3102781 | 31160.3 |
| 3-oxoacyl-(acyl-carrier-protein) reductase fabg | shim_31150 | Q92RN6 | Negative | 3102785 - 3103546 | 27130.5 |
| l-arabonate dehydratase | shim_31160 | Q92RP0 | Negative | 3103546 - 3105255 | 61516.4 |
| alpha-galactosidase | shim_31170 | P16551 | Negative | 3105252 - 3107318 | 76321.1 |
| l-arabinose transport system permease protein araq | shim_31180 | Q55473 | Negative | 3107315 - 3108163 | 31195.8 |
| l-arabinose transport system permease protein arap | shim_31190 | O32155 | Negative | 3108165 - 3109091 | 35144.3 |
| multiple sugar-binding protein precursor | shim_31200 | Not Available | Negative | 3109189 - 3110445 | 46583.9 |
| transcriptional regulator kdgr | shim_31210 | P77300 | Positive | 3110594 - 3111388 | 29091.7 |
| maltose/maltodextrin import atp-binding protein malk | shim_31220 | Q01937 | Positive | 3111385 - 3112443 | 38600.6 |
| hypothetical protein | shim_31230 | Not Available | Positive | 3112872 - 3113252 | 12627.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
