Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acyl homoserine lactonase | shim_30940 | Not Available | Positive | 3082567 - 3083499 | 33027.3 |
| magnesium transporter mgte | shim_30950 | Q5SMG8 | Negative | 3083534 - 3084928 | 49816.6 |
| 6-phosphofructokinase isozyme 2 | shim_30960 | P9WID2 | Positive | 3085127 - 3086080 | 32660.0 |
| glutamine-dependent nad(+) synthetase | shim_30970 | Q03638 | Negative | 3086090 - 3087748 | 61215.1 |
| hypothetical protein | shim_30980 | Not Available | Negative | 3087821 - 3088567 | 26269.6 |
| morn repeat protein | shim_30990 | Not Available | Positive | 3088757 - 3090148 | 48986.9 |
| glyoxalase-like domain protein | shim_31000 | Not Available | Negative | 3090216 - 3090713 | 18695.1 |
| hth-type transcriptional regulator cysl | shim_31010 | A4QH19 | Positive | 3090812 - 3091720 | 32417.7 |
| c-factor | shim_31020 | P21158 | Negative | 3091731 - 3092390 | 23248.8 |
| hypothetical protein | shim_31030 | Not Available | Negative | 3092559 - 3092672 | 4110.16 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
