Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-formylglutamate amidohydrolase | shim_02770 | Not Available | Negative | 263582 - 264373 | 28554.8 |
| dna-binding transcriptional regulator hexr | shim_02780 | O68281 | Positive | 264493 - 265365 | 32714.1 |
| methyl-accepting chemotaxis protein ii | shim_02790 | P21822 | Negative | 265715 - 267454 | 61396.6 |
| nadh oxidase | shim_02800 | P32382 | Positive | 267980 - 269089 | 40128.5 |
| transaldolase b | shim_02810 | B9JAX6 | Positive | 269289 - 270233 | 33581.1 |
| hypothetical protein | shim_02820 | Not Available | Negative | 270717 - 271157 | 17017.2 |
| 6,7-dimethyl-8-ribityllumazine synthase 2 | shim_02830 | Q2YKV1 | Negative | 271689 - 272162 | 16795.1 |
| beta-xylosidase | shim_02840 | P07129 | Positive | 272523 - 274136 | 60271.5 |
| endonuclease/exonuclease/phosphatase family protein | shim_02850 | Not Available | Negative | 274176 - 275171 | 36576.9 |
| hypothetical protein | shim_02860 | Not Available | Positive | 275638 - 276147 | 18762.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
