Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_30840 | Not Available | Negative | 3069748 - 3070152 | 14885.5 |
| glycine--trna ligase alpha subunit | shim_30850 | A1AZF6 | Negative | 3070236 - 3071165 | 35062.4 |
| putative peptidoglycan binding domain protein | shim_30860 | Not Available | Positive | 3071318 - 3073081 | 63106.8 |
| quercetin 2,3-dioxygenase | shim_30870 | P58112 | Positive | 3073844 - 3074755 | 33649.0 |
| glycine dehydrogenase (decarboxylating) | shim_30880 | Q16AX0 | Negative | 3074918 - 3077767 | 104097.0 |
| glycine cleavage system h protein | shim_30890 | C3MCZ7 | Negative | 3077959 - 3078318 | 13333.7 |
| aminomethyltransferase | shim_30900 | Q54DD3 | Negative | 3078337 - 3079461 | 39289.4 |
| hth-type transcriptional repressor nsrr | shim_30910 | Q9R9M8 | Negative | 3079787 - 3080191 | 14500.6 |
| hypothetical protein | shim_30920 | Not Available | Positive | 3080202 - 3080897 | 25491.1 |
| hypothetical protein | shim_30930 | Not Available | Negative | 3080944 - 3082335 | 50706.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
