Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| secreted effector protein pipb | shim_30740 | Not Available | Negative | 3061181 - 3062749 | 57431.9 |
| 50s ribosomal protein l23 | shim_30750 | Q1GK35 | Negative | 3062913 - 3063209 | 10726.1 |
| 50s ribosomal protein l4 | shim_30760 | Q16AF3 | Negative | 3063206 - 3063823 | 22189.9 |
| 50s ribosomal protein l3 | shim_30770 | Q5LLU6 | Negative | 3063820 - 3064548 | 25427.8 |
| 30s ribosomal protein s10 | shim_30780 | Q5LLU5 | Negative | 3064558 - 3064866 | 11463.0 |
| hypothetical protein | shim_30790 | Not Available | Negative | 3065046 - 3065591 | 20211.4 |
| hypothetical protein | shim_30800 | Not Available | Positive | 3065993 - 3066940 | 36047.9 |
| dtdp-4-oxo-6-deoxy-d-allose reductase | shim_30810 | Q93VR3 | Positive | 3066882 - 3067802 | 33761.5 |
| sodium/glutamate symport carrier protein | shim_30820 | P0AER8 | Negative | 3068005 - 3069219 | 42593.0 |
| hypothetical protein | shim_30830 | Not Available | Negative | 3069224 - 3069751 | 19255.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
