Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l30 | shim_30540 | Q1GK11 | Negative | 3048440 - 3048628 | 6982.62 |
| 30s ribosomal protein s5 | shim_30550 | A8LM74 | Negative | 3048641 - 3049207 | 20520.8 |
| 50s ribosomal protein l18 | shim_30560 | Q5LW42 | Negative | 3049323 - 3049685 | 13062.9 |
| 50s ribosomal protein l6 | shim_30570 | A8LM72 | Negative | 3049697 - 3050230 | 19267.2 |
| 30s ribosomal protein s8 | shim_30580 | Q5LW44 | Negative | 3050242 - 3050631 | 14021.9 |
| 30s ribosomal protein s14 | shim_30590 | Q5LW45 | Negative | 3050644 - 3050949 | 11679.5 |
| 50s ribosomal protein l5 | shim_30600 | Q5LW46 | Negative | 3050968 - 3051528 | 20605.9 |
| 50s ribosomal protein l24 | shim_30610 | Q5LW47 | Negative | 3051521 - 3051832 | 10843.2 |
| 50s ribosomal protein l14 | shim_30620 | Q5LW48 | Negative | 3051834 - 3052202 | 13412.6 |
| 30s ribosomal protein s17 | shim_30630 | Q1GK20 | Negative | 3052299 - 3052529 | 8739.55 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
