Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal large subunit pseudouridine synthase c | shim_30340 | Q9KQH0 | Negative | 3034206 - 3035252 | 38616.5 |
| putative fluoride ion transporter crcb | shim_30350 | Q1GJZ3 | Negative | 3035249 - 3035638 | 12955.3 |
| replication-associated recombination protein a | shim_30360 | P39918 | Negative | 3035646 - 3036977 | 48642.1 |
| periplasmic serine endoprotease degp precursor | shim_30370 | A6VUA4 | Negative | 3036983 - 3038365 | 48520.1 |
| 50s ribosomal protein l17 | shim_30380 | Q16AB7 | Negative | 3038523 - 3038942 | 15961.4 |
| dna-directed rna polymerase subunit alpha | shim_30390 | Q5LW32 | Negative | 3039082 - 3040098 | 37028.1 |
| 30s ribosomal protein s11 | shim_30400 | Q1GK05 | Negative | 3040213 - 3040602 | 13818.5 |
| 30s ribosomal protein s13 | shim_30410 | Q28UT0 | Negative | 3040618 - 3040986 | 13659.7 |
| hypothetical protein | shim_30420 | Not Available | Negative | 3041208 - 3041639 | 16919.4 |
| hypothetical protein | shim_30430 | Not Available | Negative | 3042003 - 3042371 | 13717.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
