Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fatty acid hydroxylase superfamily protein | shim_30240 | Not Available | Positive | 3025131 - 3025925 | 30148.5 |
| hypothetical protein | shim_30250 | Not Available | Positive | 3025922 - 3026572 | 22759.3 |
| histidine phosphatase superfamily (branch 1) | shim_30260 | Not Available | Positive | 3026569 - 3027078 | 18926.3 |
| 3-oxoacyl-(acyl-carrier-protein) reductase fabg | shim_30270 | Q8NBN7 | Negative | 3027085 - 3027870 | 27532.0 |
| glutamine transport atp-binding protein glnq | shim_30280 | Q52666 | Negative | 3027965 - 3028756 | 29913.3 |
| inner membrane amino-acid abc transporter permease protein yhdy | shim_30290 | Q52665 | Negative | 3028772 - 3030067 | 47034.6 |
| putative glutamine abc transporter permease protein glnm | shim_30300 | Q52664 | Negative | 3030069 - 3031301 | 44776.4 |
| general l-amino acid-binding periplasmic protein aapj precursor | shim_30310 | Q52663 | Negative | 3031426 - 3032442 | 35300.6 |
| atp12 chaperone protein | shim_30320 | Not Available | Negative | 3032644 - 3033354 | 26213.0 |
| pyrophosphatase ppax | shim_30330 | Q8UEY9 | Negative | 3033351 - 3034028 | 23955.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
