Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-arg | Not Available | Not Available | Positive | 3017439 - 3017515 | Not Available |
| sensor protein zras | shim_30150 | Q55932 | Negative | 3017575 - 3018963 | 50187.4 |
| mercuric reductase | shim_30160 | P30341 | Negative | 3018991 - 3020409 | 49810.3 |
| snare associated golgi protein | shim_30170 | Not Available | Negative | 3020409 - 3021140 | 25803.2 |
| 50s ribosomal protein l34 | shim_30180 | Q1GJX0 | Positive | 3021504 - 3021638 | 5169.46 |
| ribonuclease p protein component | shim_30190 | Q5LW06 | Positive | 3021661 - 3022077 | 15581.9 |
| putative hth-type transcriptional regulator yybr | shim_30200 | P96673 | Negative | 3022098 - 3022457 | 13394.2 |
| putative monooxygenase | shim_30210 | Not Available | Positive | 3022587 - 3022874 | 10657.6 |
| zinc-type alcohol dehydrogenase-like protein | shim_30220 | Q6G7C8 | Positive | 3022936 - 3023949 | 35857.2 |
| acetylglutamate kinase | shim_30230 | Q5LW17 | Positive | 3024207 - 3025070 | 30300.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
