Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane amino-acid abc transporter permease protein yecs | shim_30040 | P54953 | Positive | 3007416 - 3008078 | 24868.2 |
| glutamine transport system permease protein glnp | shim_30050 | Q4UKC4 | Positive | 3008090 - 3008752 | 23993.8 |
| glutamine transport atp-binding protein glnq | shim_30060 | O34677 | Positive | 3008749 - 3009471 | 26275.8 |
| 4-hydroxy-tetrahydrodipicolinate synthase | shim_30070 | Not Available | Positive | 3009508 - 3010467 | 34204.9 |
| 4-hydroxyproline epimerase | shim_30080 | Q5LKW3 | Positive | 3010458 - 3011390 | 32524.7 |
| d-amino acid dehydrogenase small subunit | shim_30090 | B4RBL4 | Positive | 3011387 - 3012646 | 45111.8 |
| 4-hydroxyproline betaine 2-epimerase | shim_30100 | A0NXQ8 | Positive | 3012659 - 3013762 | 39504.1 |
| proline racemase | shim_30110 | A0NXQ9 | Positive | 3013772 - 3014803 | 36693.5 |
| putative hth-type transcriptional regulator ydfh | shim_30120 | Not Available | Positive | 3014911 - 3015591 | 25424.6 |
| alpha-ketoglutaric semialdehyde dehydrogenase | shim_30130 | Not Available | Positive | 3015670 - 3017178 | 52652.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
