Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trimethylamine methyltransferase (mttb) | shim_29940 | Not Available | Negative | 2993885 - 2995432 | 56745.6 |
| alpha/beta hydrolase family protein | shim_29950 | Not Available | Negative | 2995600 - 2997384 | 65647.3 |
| hth-type transcriptional regulator gltc | shim_29960 | Not Available | Negative | 2997633 - 2998502 | 31433.2 |
| aldehyde dehydrogenase, thermostable | shim_29970 | P42236 | Positive | 2998619 - 3000070 | 51653.3 |
| membrane dipeptidase (peptidase family m19) | shim_29980 | M1VV65 | Positive | 3000070 - 3001047 | 36514.9 |
| hypothetical protein | shim_29990 | Not Available | Positive | 3001044 - 3002729 | 62811.4 |
| hypothetical protein | shim_30000 | Not Available | Positive | 3002726 - 3003352 | 21943.7 |
| (2r)-3-sulfolactate dehydrogenase (nadp(+)) | shim_30010 | Q4KGT8 | Positive | 3003365 - 3004375 | 33901.5 |
| glycine betaine transporter opud | shim_30020 | Not Available | Positive | 3004436 - 3006271 | 64452.1 |
| cystine-binding periplasmic protein precursor | shim_30030 | P0AEN0 | Positive | 3006556 - 3007356 | 28984.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
