Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane abc transporter permease protein ydcv | shim_02670 | Not Available | Negative | 252515 - 253366 | 31044.9 |
| spermidine/putrescine transport system permease protein potb | shim_02680 | P45170 | Negative | 253378 - 254235 | 31784.1 |
| spermidine/putrescine import atp-binding protein pota | shim_02690 | Not Available | Negative | 254236 - 255336 | 39672.6 |
| putrescine-binding periplasmic protein precursor | shim_02700 | Q9I6J0 | Negative | 255403 - 256473 | 37503.5 |
| 1,3-propanediol dehydrogenase | shim_02710 | Q59104 | Negative | 256673 - 257818 | 40076.8 |
| succinate semialdehyde dehydrogenase (nad(p)+) sad | shim_02720 | O32507 | Negative | 257822 - 259195 | 48677.8 |
| glutamine synthetase | shim_02730 | O88070 | Negative | 259199 - 260563 | 51184.5 |
| monocarboxylate 2-oxoacid-binding periplasmic protein precursor | shim_02740 | Not Available | Negative | 260621 - 261652 | 38734.7 |
| sialic acid trap transporter permease protein siat | shim_02750 | Not Available | Negative | 261698 - 263026 | 48365.8 |
| tripartite atp-independent periplasmic transporter, dctq component | shim_02760 | Not Available | Negative | 263016 - 263594 | 21810.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
