Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-keto-5-aminohexanoate cleavage enzyme | shim_29840 | B0VHH0 | Negative | 2983783 - 2984616 | 29855.6 |
| protocatechuate 3,4-dioxygenase alpha chain | shim_29850 | P20371 | Negative | 2984667 - 2985287 | 22765.7 |
| protocatechuate 3,4-dioxygenase beta chain | shim_29860 | P00437 | Negative | 2985290 - 2986018 | 27353.3 |
| carboxymuconolactone decarboxylase family protein | shim_29870 | Not Available | Negative | 2986015 - 2986425 | 14869.7 |
| 3-oxoadipate enol-lactonase 2 | shim_29880 | Not Available | Negative | 2986418 - 2987206 | 27849.7 |
| p-hydroxybenzoate hydroxylase | shim_29890 | P20586 | Negative | 2987206 - 2988375 | 43718.4 |
| hth-type transcriptional regulator gbpr | shim_29900 | P0A4T6 | Positive | 2988468 - 2989382 | 33746.1 |
| 2-dehydro-3-deoxygluconokinase | shim_29910 | P42720 | Positive | 2989508 - 2990434 | 32540.4 |
| autoinducer 2 sensor kinase/phosphatase luxq | shim_29920 | Q8D5Z6 | Negative | 2990444 - 2992693 | 82105.9 |
| hypothetical protein | shim_29930 | Not Available | Negative | 2992842 - 2993819 | 38013.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
