Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| snoal-like polyketide cyclase | shim_29740 | Not Available | Negative | 2976108 - 2976578 | 16863.6 |
| hypothetical protein | shim_29750 | Not Available | Negative | 2976600 - 2976914 | 11386.5 |
| hth-type transcriptional regulator dmlr | shim_29760 | P43011 | Positive | 2977010 - 2977894 | 32655.2 |
| diadenosine tetraphosphatase | shim_29770 | Not Available | Positive | 2978203 - 2978916 | 26292.4 |
| hypothetical protein | shim_29780 | Not Available | Negative | 2979132 - 2979329 | 7387.71 |
| serine/threonine-protein kinase hipa | shim_29790 | P23874 | Negative | 2979600 - 2980901 | 48187.8 |
| antitoxin hipb | shim_29800 | Not Available | Negative | 2980903 - 2981154 | 9128.97 |
| hypothetical protein | shim_29810 | Not Available | Negative | 2981293 - 2982156 | 32297.5 |
| hypothetical protein | shim_29820 | Not Available | Negative | 2982153 - 2982578 | 15765.1 |
| 3-carboxy-cis,cis-muconate cycloisomerase | shim_29830 | P32427 | Negative | 2982633 - 2983700 | 38443.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
