Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_29610 | Not Available | Positive | 2965638 - 2966105 | 17831.5 |
| p-protein | shim_29620 | Q9SA96 | Negative | 2966123 - 2966956 | 29840.5 |
| cytochrome c-552 | shim_29630 | P54820 | Positive | 2967074 - 2967601 | 18223.5 |
| Trna-ile | Not Available | Not Available | Positive | 2969849 - 2969925 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 2970072 - 2970147 | Not Available |
| hypothetical protein | shim_29670 | Not Available | Positive | 2970391 - 2970606 | 7921.95 |
| hypothetical protein | shim_29700 | Not Available | Negative | 2974028 - 2974321 | 10868.1 |
| sulfoxide reductase heme-binding subunit yedz | shim_29710 | A6WYN0 | Negative | 2974337 - 2974945 | 22822.5 |
| hypothetical protein | shim_29720 | Not Available | Negative | 2975022 - 2975564 | 19717.6 |
| snoal-like domain protein | shim_29730 | Not Available | Negative | 2975588 - 2976079 | 17611.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
