Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| universal stress protein family protein | shim_29510 | Not Available | Positive | 2953237 - 2954076 | 30087.3 |
| nitrogen fixation regulation protein fixk | shim_29520 | P51007 | Negative | 2954183 - 2954935 | 27910.8 |
| oxygen-independent coproporphyrinogen-iii oxidase | shim_29530 | Q51676 | Positive | 2954994 - 2956349 | 49977.3 |
| glutathione import atp-binding protein gsia | shim_29540 | P33916 | Negative | 2956409 - 2958007 | 57489.6 |
| inner membrane abc transporter permease protein yeje | shim_29550 | P33915 | Negative | 2958004 - 2959122 | 41543.8 |
| inner membrane abc transporter permease protein yejb | shim_29560 | P0AFU1 | Negative | 2959122 - 2960207 | 39750.2 |
| periplasmic oligopeptide-binding protein precursor | shim_29570 | P33913 | Negative | 2960215 - 2962152 | 72101.4 |
| trifunctional nucleotide phosphoesterase protein yfkn precursor | shim_29580 | O34313 | Negative | 2962509 - 2964401 | 68775.3 |
| hypothetical protein | shim_29590 | Not Available | Negative | 2964460 - 2964594 | 4906.01 |
| nadh pyrophosphatase | shim_29600 | Q4R7L8 | Positive | 2964621 - 2965592 | 35552.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
