Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine carboxypeptidase dacf precursor | shim_29410 | P08506 | Positive | 2942347 - 2943819 | 52926.5 |
| cytochrome oxidase maturation protein cbb3-type | shim_29420 | Not Available | Negative | 2943883 - 2944041 | 5736.86 |
| putative copper-transporting atpase pacs | shim_29430 | O33533 | Negative | 2944046 - 2946232 | 75520.3 |
| fixh | shim_29440 | Not Available | Negative | 2946235 - 2946696 | 16685.1 |
| quinol dehydrogenase membrane component | shim_29450 | P54932 | Negative | 2946696 - 2948117 | 53671.1 |
| hth-type transcriptional regulator virs | shim_29460 | P72171 | Negative | 2948238 - 2949233 | 37564.6 |
| cbb3-type cytochrome c oxidase subunit ccop | shim_29470 | Q3J015 | Negative | 2949609 - 2950475 | 31093.7 |
| cbb3-type cytochrome oxidase component fixq | shim_29480 | Not Available | Negative | 2950472 - 2950657 | 7293.67 |
| cytochrome c oxidase, mono-heme subunit/fixo | shim_29490 | Not Available | Negative | 2950669 - 2951397 | 27336.6 |
| hypothetical protein | shim_29500 | P98059 | Negative | 2951412 - 2953013 | 60080.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
