Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoacyl-(acyl-carrier-protein) reductase fabg | shim_29310 | P73574 | Positive | 2933175 - 2933999 | 28202.9 |
| succinyl-coa:(r)-benzylsuccinate coa-transferase subunit bbse | shim_29320 | O06543 | Positive | 2934055 - 2935134 | 38123.4 |
| uroporphyrinogen decarboxylase | shim_29330 | Q16AR3 | Negative | 2935324 - 2936358 | 37631.0 |
| porphobilinogen deaminase | shim_29340 | A1B853 | Positive | 2936565 - 2937524 | 33784.4 |
| hypothetical protein | shim_29350 | Not Available | Positive | 2937628 - 2938197 | 20948.3 |
| coproporphyrinogen-iii oxidase, aerobic | shim_29360 | Q89SC2 | Negative | 2938246 - 2939139 | 33060.8 |
| 3-oxoacyl-(acyl-carrier-protein) reductase fabg | shim_29370 | A5W4G5 | Negative | 2939215 - 2940015 | 28234.7 |
| ribosomal rna large subunit methyltransferase g | shim_29380 | Not Available | Negative | 2940064 - 2941047 | 35834.5 |
| atp-dependent clp protease adapter protein clps | shim_29390 | Q16AR8 | Negative | 2941073 - 2941411 | 12811.6 |
| dump phosphatase | shim_29400 | Not Available | Positive | 2941506 - 2942207 | 25837.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
