Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_29210 | Not Available | Negative | 2923136 - 2923801 | 24999.3 |
| hypothetical protein | shim_29220 | Not Available | Negative | 2923891 - 2924697 | 30734.1 |
| transcriptional regulatory protein degu | shim_29230 | O07528 | Negative | 2924826 - 2925437 | 21769.7 |
| oxidoreductase molybdopterin binding domain protein | shim_29240 | Not Available | Positive | 2925730 - 2926251 | 18915.7 |
| aerobic respiration control sensor protein arcb | shim_29250 | Not Available | Positive | 2926303 - 2928891 | 93082.3 |
| hth-type transcriptional regulator benm | shim_29260 | Not Available | Negative | 2928895 - 2929803 | 32827.6 |
| 3-oxoadipyl-coa/3-oxo-5,6-dehydrosuberyl-coa thiolase | shim_29270 | O62742 | Positive | 2929909 - 2931093 | 41366.9 |
| hypothetical protein | shim_29280 | B1W4R8 | Positive | 2931099 - 2931566 | 16392.3 |
| putative enoyl-coa hydratase 1 | shim_29290 | Not Available | Positive | 2931579 - 2931992 | 14667.6 |
| acyl-coa dehydrogenase | shim_29300 | Q60HI0 | Positive | 2932016 - 2933164 | 42022.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
