Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp synthase subunit beta | shim_28910 | Q5LNP1 | Negative | 2889765 - 2891189 | 50561.4 |
| atp synthase gamma chain | shim_28920 | Q1GEU7 | Negative | 2891206 - 2892078 | 31128.1 |
| atp synthase subunit alpha | shim_28930 | Q5LNN9 | Negative | 2892091 - 2893629 | 54669.4 |
| atp synthase subunit delta | shim_28940 | Q28TJ9 | Negative | 2893629 - 2894189 | 19729.1 |
| hypothetical protein | shim_28950 | Not Available | Positive | 2894593 - 2895891 | 45837.2 |
| hypothetical protein | shim_28960 | Not Available | Positive | 2895970 - 2897346 | 48128.9 |
| hypothetical protein | shim_28970 | P05447 | Negative | 2897375 - 2898115 | 27099.1 |
| hydroxyacylglutathione hydrolase | shim_28980 | Q5LNN5 | Positive | 2898178 - 2898945 | 27319.5 |
| atp-dependent clp protease atp-binding subunit clpa | shim_28990 | P05444 | Positive | 2899118 - 2901448 | 85105.1 |
| putative peptidase | shim_29000 | Not Available | Positive | 2901451 - 2902413 | 33986.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
