Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2fe-2s ferredoxin-5 | shim_02570 | Not Available | Negative | 241490 - 242650 | 42383.2 |
| hypothetical protein | shim_02580 | Not Available | Negative | 242866 - 242988 | 4730.99 |
| thiamine biosynthesis lipoprotein apbe precursor | shim_02590 | Not Available | Negative | 243257 - 244147 | 31636.1 |
| nosl | shim_02600 | O68481 | Negative | 244144 - 244671 | 18319.8 |
| abc-2 family transporter protein | shim_02610 | Q9HYK9 | Negative | 244668 - 245489 | 28101.2 |
| putative abc transporter atp-binding protein yxlf | shim_02620 | P19844 | Negative | 245486 - 246379 | 31955.6 |
| periplasmic copper-binding protein (nosd) | shim_02630 | Q9HYL1 | Negative | 246369 - 247631 | 45640.4 |
| nitrous-oxide reductase precursor | shim_02640 | Q51705 | Negative | 247634 - 249544 | 70364.8 |
| putative electron transport protein yccm | shim_02650 | Q9HYL3 | Negative | 249563 - 251737 | 79944.3 |
| hypothetical protein | shim_02660 | Not Available | Negative | 251734 - 252216 | 17123.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
