Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_28810 | Not Available | Positive | 2882340 - 2883215 | 31418.2 |
| (r)-specific enoyl-coa hydratase | shim_28820 | Q2RQ36 | Positive | 2883338 - 2883781 | 16065.4 |
| riboflavin biosynthesis protein ribf | shim_28830 | P22990 | Positive | 2883833 - 2884765 | 33480.7 |
| hypothetical protein | shim_28840 | O68068 | Positive | 2884762 - 2885235 | 18385.8 |
| low specificity l-threonine aldolase | shim_28850 | Q9HTF1 | Positive | 2885235 - 2886281 | 37620.5 |
| pimeloyl-(acyl-carrier protein) methyl ester esterase | shim_28860 | Not Available | Negative | 2886278 - 2887075 | 28045.9 |
| 2-hydroxychromene-2-carboxylate isomerase | shim_28870 | Not Available | Negative | 2887079 - 2887678 | 21690.5 |
| ribose-phosphate pyrophosphokinase | shim_28880 | B9KPJ0 | Positive | 2887795 - 2888811 | 36925.8 |
| h-type lectin domain protein | shim_28890 | P05450 | Negative | 2888886 - 2889239 | 13612.0 |
| atp synthase epsilon chain | shim_28900 | Q5LNP2 | Negative | 2889358 - 2889753 | 13804.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
