Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative oxidoreductase uxub | shim_28710 | Q03326 | Negative | 2873438 - 2874415 | 34172.6 |
| sulfotransferase family protein | shim_28720 | Not Available | Negative | 2874497 - 2875144 | 24502.2 |
| 3-oxoadipate enol-lactonase 2 | shim_28730 | Q55217 | Positive | 2875257 - 2876141 | 31364.5 |
| general stress protein 14 | shim_28740 | Not Available | Negative | 2876146 - 2876904 | 26614.3 |
| hypothetical protein | shim_28750 | Not Available | Negative | 2876977 - 2877639 | 23833.8 |
| trab family protein | shim_28760 | Not Available | Positive | 2877736 - 2878740 | 36595.0 |
| putative manganese-dependent inorganic pyrophosphatase | shim_28770 | Q5FK05 | Positive | 2878859 - 2879773 | 32828.2 |
| alpha/beta hydrolase family protein | shim_28780 | Not Available | Negative | 2879922 - 2880827 | 33205.5 |
| transcriptional regulator hosa | shim_28790 | Not Available | Negative | 2880827 - 2881285 | 16731.3 |
| hypothetical protein | shim_28800 | Not Available | Positive | 2881443 - 2882171 | 27274.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
