Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative hydroxypyruvate reductase | shim_28610 | P70788 | Negative | 2864674 - 2865921 | 41854.0 |
| hypothetical protein | shim_28620 | Not Available | Negative | 2865918 - 2866007 | 3260.97 |
| alpha/beta hydrolase family protein | shim_28630 | Not Available | Negative | 2866043 - 2866900 | 31031.2 |
| hypothetical protein | shim_28640 | Not Available | Positive | 2866917 - 2867417 | 18700.3 |
| eama-like transporter family protein | shim_28650 | P29370 | Negative | 2867414 - 2868283 | 29289.8 |
| putative ribosome biogenesis gtpase rsga | shim_28660 | Q87FP9 | Negative | 2868330 - 2869421 | 39311.6 |
| 60 kda chaperonin 1 | shim_28670 | Q1GJ36 | Negative | 2869631 - 2871277 | 57546.2 |
| 10 kda chaperonin 1 | shim_28680 | A8LJQ0 | Negative | 2871316 - 2871603 | 10179.3 |
| hypothetical protein | shim_28690 | Not Available | Positive | 2871998 - 2872705 | 26481.1 |
| 2-hydroxychromene-2-carboxylate isomerase | shim_28700 | Not Available | Negative | 2872745 - 2873392 | 23679.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
