Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative cytochrome p450 120 | shim_28510 | P9WPM6 | Positive | 2854996 - 2856336 | 49598.0 |
| adenylate cyclase 1 | shim_28520 | Not Available | Positive | 2856401 - 2858104 | 62121.0 |
| putative bifunctional sat/aps kinase | shim_28530 | Q4I1N3 | Positive | 2858223 - 2860298 | 76731.4 |
| immunogenic protein mpt70 precursor | shim_28540 | P74615 | Negative | 2860364 - 2860864 | 16864.6 |
| hypothetical protein | shim_28550 | Not Available | Positive | 2861035 - 2861391 | 12998.2 |
| hypothetical protein | shim_28560 | Not Available | Negative | 2861931 - 2862173 | 9167.63 |
| small heat shock protein ibpa | shim_28570 | A8G7R8 | Negative | 2862178 - 2862591 | 15274.1 |
| hypothetical protein | shim_28580 | Not Available | Positive | 2862793 - 2863017 | 8562.29 |
| n5-carboxyaminoimidazole ribonucleotide mutase | shim_28590 | Q9KVT7 | Positive | 2863099 - 2863590 | 16955.5 |
| n5-carboxyaminoimidazole ribonucleotide synthase | shim_28600 | P52559 | Positive | 2863583 - 2864659 | 37939.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
