Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nickel and cobalt resistance protein cnrb | shim_28410 | Not Available | Negative | 2845338 - 2846573 | 43911.5 |
| ftsx-like permease family protein | shim_28420 | Not Available | Negative | 2846579 - 2848942 | 84156.0 |
| putative abc transporter atp-binding protein | shim_28430 | Q58903 | Negative | 2848947 - 2849675 | 26259.2 |
| membrane fusogenic activity | shim_28440 | Not Available | Negative | 2849770 - 2850009 | 9104.85 |
| prolipoprotein diacylglyceryl transferase | shim_28450 | Q5LUZ4 | Positive | 2850131 - 2851012 | 32286.1 |
| hypothetical protein | shim_28460 | Q08BY0 | Positive | 2851009 - 2852064 | 37418.8 |
| laccase domain protein yfih | shim_28470 | P67257 | Positive | 2852061 - 2852819 | 27024.9 |
| hypothetical protein | shim_28480 | Not Available | Positive | 2852999 - 2853136 | 4847.93 |
| leucine-responsive regulatory protein | shim_28490 | Not Available | Negative | 2853234 - 2853734 | 18433.1 |
| thioredoxin reductase | shim_28500 | Q92I02 | Positive | 2853951 - 2854892 | 33580.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
