Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid a export atp-binding/permease protein msba | shim_28310 | Q2LVL0 | Positive | 2835486 - 2837357 | 67446.2 |
| 3-oxoacyl-(acyl-carrier-protein) synthase 3 | shim_28320 | Q9HYV7 | Positive | 2837488 - 2838603 | 40517.9 |
| autoinducer binding domain protein | shim_28330 | Not Available | Negative | 2839013 - 2839828 | 30740.9 |
| hypothetical protein | shim_28340 | Not Available | Negative | 2839906 - 2840364 | 16670.8 |
| sulfotransferase family protein | shim_28350 | Not Available | Positive | 2840792 - 2841604 | 30590.8 |
| thymidine kinase | shim_28360 | Q5LUY8 | Positive | 2841726 - 2842316 | 21964.2 |
| glycerate dehydrogenase | shim_28370 | Q9UYR1 | Negative | 2842364 - 2843317 | 34631.9 |
| methionine--trna ligase | shim_28380 | P37584 | Negative | 2843314 - 2843652 | 12345.0 |
| pyrroline-5-carboxylate reductase | shim_28390 | P22008 | Negative | 2843645 - 2844460 | 27406.2 |
| hypothetical protein | shim_28400 | Not Available | Negative | 2844495 - 2844995 | 19122.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
