Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional regulator lrpc | shim_28210 | Not Available | Positive | 2824454 - 2824891 | 15703.0 |
| glycine cleavage system transcriptional activator | shim_28220 | P0A9F8 | Negative | 2824888 - 2825685 | 28713.5 |
| phytanoyl-coa dioxygenase (phyh) | shim_28230 | Not Available | Positive | 2825883 - 2826743 | 31756.9 |
| hypothetical protein | shim_28240 | Not Available | Positive | 2826740 - 2827381 | 24420.2 |
| valine--trna ligase | shim_28250 | Q5LP30 | Positive | 2827659 - 2830670 | 111233.0 |
| hypothetical protein | shim_28260 | Not Available | Positive | 2831387 - 2831713 | 11751.4 |
| 1,2-epoxyphenylacetyl-coa isomerase | shim_28270 | Not Available | Negative | 2831857 - 2832648 | 28234.4 |
| histidinol-phosphate aminotransferase | shim_28280 | Q4FSH2 | Positive | 2832772 - 2833875 | 39396.9 |
| hypothetical protein | shim_28290 | Not Available | Positive | 2833981 - 2834151 | 6423.06 |
| soluble hydrogenase 42 kda subunit | shim_28300 | P55819 | Negative | 2834148 - 2835344 | 42240.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
