Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan-binding protein arfa | shim_28010 | Not Available | Positive | 2804085 - 2806145 | 72439.2 |
| hypothetical protein | shim_28020 | Not Available | Positive | 2806132 - 2806458 | 12585.9 |
| n-acyl-d-glutamate deacylase | shim_28030 | P72349 | Positive | 2806534 - 2808078 | 55550.2 |
| molybdopterin synthase catalytic subunit | shim_28040 | Q53091 | Negative | 2808216 - 2808659 | 16431.6 |
| molybdopterin synthase sulfur carrier subunit | shim_28050 | Not Available | Negative | 2808674 - 2808919 | 9065.72 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | shim_28060 | Q3IYX7 | Negative | 2808925 - 2809584 | 24479.5 |
| ceramidase | shim_28070 | Not Available | Negative | 2809690 - 2810343 | 24014.0 |
| metal-dependent hydrolase | shim_28080 | Q5LP74 | Positive | 2810404 - 2811108 | 25430.4 |
| trna-specific adenosine deaminase | shim_28090 | A9CK16 | Negative | 2811105 - 2811557 | 15722.6 |
| ribosomal large subunit pseudouridine synthase b | shim_28100 | Q9ZD06 | Positive | 2811622 - 2812497 | 32101.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
