Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-lactate dehydrogenase (cytochrome) | shim_27910 | Q9A943 | Positive | 2792555 - 2793745 | 43301.1 |
| rhodanese-like domain protein | shim_27920 | Not Available | Negative | 2793756 - 2794214 | 16120.8 |
| 2-oxoglutarate carboxylase small subunit | shim_27930 | Q9KWU4 | Positive | 2794497 - 2797937 | 125759.0 |
| hypothetical protein | shim_27940 | Not Available | Positive | 2798219 - 2798731 | 18981.4 |
| trna (cytidine(34)-2'-o)-methyltransferase | shim_27950 | P32813 | Positive | 2798828 - 2799286 | 17257.7 |
| glutamate--cysteine ligase gsha | shim_27960 | Q9ZNX6 | Negative | 2799462 - 2800832 | 50605.2 |
| hypothetical protein | shim_27970 | Not Available | Negative | 2800915 - 2801424 | 18303.6 |
| hypothetical protein | shim_27980 | Not Available | Negative | 2801421 - 2802326 | 34566.4 |
| ribosomal rna small subunit methyltransferase e | shim_27990 | P44627 | Negative | 2802323 - 2803048 | 26557.2 |
| 4-hydroxybenzoate octaprenyltransferase | shim_28000 | Q499N4 | Positive | 2803061 - 2804026 | 35315.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
