Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_02470 | Not Available | Positive | 232472 - 232588 | 4088.05 |
| putative aminoacrylate hydrolase rutd | shim_02480 | Not Available | Negative | 232982 - 233758 | 29025.3 |
| adenylate and guanylate cyclase catalytic domain protein | shim_02490 | Q9Z3Q0 | Negative | 233863 - 234384 | 19402.0 |
| hypothetical protein | shim_02500 | Not Available | Negative | 234369 - 234584 | 7789.49 |
| hypothetical protein | shim_02510 | Not Available | Negative | 234793 - 235158 | 13348.8 |
| leucine transcriptional activator | shim_02520 | Not Available | Negative | 235722 - 236456 | 26772.3 |
| hth-type transcriptional regulator cynr | shim_02530 | Not Available | Negative | 236907 - 237788 | 32709.5 |
| cytochrome b561 | shim_02540 | Not Available | Positive | 237905 - 238435 | 19010.1 |
| hypothetical protein | shim_02550 | Not Available | Positive | 238569 - 238970 | 14127.5 |
| moderate conductance mechanosensitive channel ybio precursor | shim_02560 | P75783 | Negative | 239187 - 241490 | 84320.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
