Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_27310 | Not Available | Positive | 2735240 - 2736583 | 48392.0 |
| hypothetical protein | shim_27320 | Not Available | Positive | 2736594 - 2737421 | 29563.2 |
| hypothetical protein | shim_27330 | Not Available | Positive | 2737425 - 2738771 | 48960.2 |
| alcohol dehydrogenase (acceptor) | shim_27340 | Not Available | Negative | 2738778 - 2740394 | 57800.8 |
| glutamate--trna ligase | shim_27350 | Q8XLP3 | Negative | 2740588 - 2742240 | 62355.8 |
| glucose--fructose oxidoreductase precursor | shim_27360 | Not Available | Negative | 2742400 - 2743542 | 40313.8 |
| inosose dehydratase | shim_27370 | Not Available | Negative | 2743546 - 2744598 | 39371.1 |
| d-ribose-binding periplasmic protein precursor | shim_27380 | P36949 | Negative | 2744684 - 2745637 | 33928.4 |
| ribose transport system permease protein rbsc | shim_27390 | P36948 | Negative | 2745717 - 2746733 | 35847.4 |
| xylose import atp-binding protein xylg | shim_27400 | Q8UBN2 | Negative | 2746726 - 2748267 | 55947.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
