Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative glutamate/gamma-aminobutyrate antiporter | shim_27210 | Q9CEY5 | Positive | 2724162 - 2725553 | 49853.7 |
| agmatine deiminase | shim_27220 | Q6LG16 | Positive | 2725622 - 2726713 | 40473.4 |
| putative glutamate/gamma-aminobutyrate antiporter | shim_27230 | Not Available | Positive | 2726857 - 2728263 | 49971.1 |
| glycine cleavage system transcriptional activator | shim_27240 | Not Available | Positive | 2728355 - 2729320 | 36068.8 |
| caspase domain protein | shim_27250 | Not Available | Negative | 2729393 - 2730907 | 53475.0 |
| outer membrane porin f precursor | shim_27260 | Not Available | Negative | 2730934 - 2731479 | 19477.8 |
| hypothetical protein | shim_27270 | Not Available | Negative | 2731521 - 2732612 | 39447.4 |
| hypothetical protein | shim_27280 | Not Available | Negative | 2732600 - 2733271 | 23970.3 |
| hypothetical protein | shim_27290 | Not Available | Positive | 2733312 - 2734193 | 32275.6 |
| hypothetical protein | shim_27300 | Not Available | Positive | 2734202 - 2735236 | 37823.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
