Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetyl-d-mannosaminuronic acid transferase | shim_27110 | Not Available | Negative | 2713149 - 2713895 | 26207.9 |
| inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase | shim_27120 | Not Available | Positive | 2714080 - 2715213 | 41028.0 |
| gdp-l-fucose synthase | shim_27130 | Not Available | Positive | 2715210 - 2716169 | 34237.5 |
| gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase | shim_27140 | P26388 | Positive | 2716166 - 2717386 | 43989.2 |
| glycosyl transferase family 2 | shim_27150 | Not Available | Positive | 2717383 - 2718348 | 35738.6 |
| putative oxidoreductase ycjs | shim_27160 | Not Available | Positive | 2718351 - 2720465 | 75800.7 |
| tyrosine-protein kinase ptk | shim_27170 | P71051 | Positive | 2720694 - 2721464 | 27573.6 |
| putrescine carbamoyltransferase | shim_27180 | Q2SRJ4 | Positive | 2721961 - 2723007 | 38721.5 |
| carbamate kinase 1 | shim_27190 | P13982 | Positive | 2723102 - 2724028 | 32693.9 |
| hypothetical protein | shim_27200 | Not Available | Positive | 2724028 - 2724183 | 5719.12 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
