Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylglucosaminyl-diphospho-decaprenol l-rhamnosyltransferase | shim_27010 | Not Available | Positive | 2697713 - 2698717 | 37585.8 |
| dimodular nonribosomal peptide synthase | shim_27020 | P45745 | Positive | 2698714 - 2703372 | 166481.0 |
| 4'-phosphopantetheinyl transferase npt | shim_27030 | O33336 | Positive | 2703372 - 2704103 | 25511.8 |
| chain length determinant protein | shim_27040 | Not Available | Positive | 2704178 - 2705452 | 47262.5 |
| undecaprenyl phosphate n,n'-diacetylbacillosamine 1-phosphate transferase | shim_27050 | Q02731 | Positive | 2705941 - 2706606 | 25098.7 |
| hypothetical protein | shim_27060 | Not Available | Positive | 2706694 - 2708196 | 56249.9 |
| serine acetyltransferase | shim_27070 | Not Available | Negative | 2708207 - 2708671 | 15975.7 |
| o-acetyltransferase oata | shim_27080 | Q2FV54 | Positive | 2708844 - 2710838 | 72017.2 |
| 6'''-hydroxyparomomycin c oxidase | shim_27090 | Not Available | Positive | 2710838 - 2712400 | 56694.0 |
| putative oxidoreductase | shim_27100 | C0KTJ6 | Positive | 2712384 - 2713139 | 26337.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
