Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bacterial sh3 domain protein | shim_02370 | Not Available | Negative | 220595 - 221119 | 19463.8 |
| glycerate dehydrogenase | shim_02380 | Q9C4M5 | Positive | 221217 - 222203 | 36070.0 |
| 2'-5'-rna ligase | shim_02390 | Not Available | Positive | 222157 - 222774 | 22506.0 |
| gamma-glutamyltranspeptidase precursor | shim_02400 | P54422 | Positive | 222816 - 224597 | 62532.0 |
| putative fad-linked oxidoreductase | shim_02410 | Q7TNG8 | Positive | 224664 - 226061 | 49188.8 |
| short chain dehydrogenase | shim_02420 | A0A0B6VQ48 | Positive | 226159 - 227232 | 38228.9 |
| hypothetical protein | shim_02430 | Not Available | Negative | 227363 - 228034 | 25332.1 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | shim_02440 | A7HYW1 | Negative | 228137 - 228946 | 28877.0 |
| pantothenate synthetase | shim_02450 | Q92NN0 | Negative | 228943 - 229785 | 29742.1 |
| 4-methylaminobutanoate oxidase (formaldehyde-forming) | shim_02460 | Q63342 | Positive | 229908 - 232472 | 95020.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
