Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_26810 | Not Available | Positive | 2668633 - 2669337 | 25242.2 |
| adenylate cyclase 1 | shim_26820 | Not Available | Positive | 2669443 - 2671017 | 57082.6 |
| hth-type transcriptional regulator gntr | shim_26830 | Not Available | Positive | 2671079 - 2672095 | 36478.2 |
| hypothetical protein | shim_26840 | Not Available | Negative | 2672096 - 2673004 | 34713.5 |
| sulfotransferase family protein | shim_26850 | Not Available | Negative | 2673004 - 2673765 | 28747.7 |
| hypothetical protein | shim_26860 | Not Available | Negative | 2673769 - 2674776 | 38443.0 |
| hypothetical protein | shim_26870 | Not Available | Negative | 2674861 - 2677119 | 85071.5 |
| hypothetical protein | shim_26880 | Not Available | Negative | 2677151 - 2678251 | 41170.4 |
| hypothetical protein | shim_26890 | Not Available | Positive | 2678347 - 2678808 | 17114.6 |
| periplasmic dipeptide transport protein precursor | shim_26900 | P06202 | Positive | 2678926 - 2680587 | 60938.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
