Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione s-transferase gst-6.0 | shim_26610 | Not Available | Positive | 2649329 - 2649922 | 22508.2 |
| putative thiazole biosynthetic enzyme | shim_26620 | Q795R8 | Negative | 2649940 - 2651103 | 41278.4 |
| mechanosensitive channel msck precursor | shim_26630 | O28726 | Negative | 2651100 - 2652413 | 47716.6 |
| putative enoyl-coa hydratase echa8 | shim_26640 | A4YI89 | Negative | 2652844 - 2653461 | 21304.2 |
| glucose 1-dehydrogenase | shim_26650 | P14802 | Negative | 2653458 - 2654210 | 25972.1 |
| hypothetical protein | shim_26660 | Not Available | Positive | 2654340 - 2655842 | 52720.1 |
| peptidase pmba | shim_26670 | P0AFK1 | Positive | 2655965 - 2657311 | 46911.0 |
| inositol-1-monophosphatase | shim_26680 | Q98F59 | Positive | 2657298 - 2658086 | 28358.7 |
| hypothetical protein | shim_26690 | Not Available | Positive | 2658189 - 2658431 | 9116.65 |
| 3-deoxy-d-manno-octulosonic acid transferase | shim_26700 | Not Available | Positive | 2658440 - 2659660 | 44716.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
