Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_26510 | O66631 | Negative | 2638575 - 2639231 | 23379.1 |
| porin | shim_26520 | Not Available | Negative | 2639383 - 2640264 | 30170.9 |
| hypothetical protein | shim_26530 | Not Available | Positive | 2640306 - 2640434 | 4795.89 |
| porin | shim_26540 | P39767 | Negative | 2640435 - 2641325 | 30598.0 |
| porin | shim_26550 | Not Available | Negative | 2641715 - 2642623 | 30586.2 |
| hypothetical protein | shim_26560 | Not Available | Positive | 2642915 - 2643430 | 18497.7 |
| gdp-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase | shim_26570 | Not Available | Negative | 2643512 - 2644771 | 47506.4 |
| leucine--trna ligase | shim_26580 | Q1GKN8 | Positive | 2644952 - 2647612 | 98490.7 |
| hypothetical protein | shim_26590 | Not Available | Positive | 2647710 - 2648204 | 17415.5 |
| dna polymerase iii subunit delta | shim_26600 | Not Available | Positive | 2648201 - 2649226 | 37180.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
